Publications 2022

†: contributed equally, joint first authors
*: co-corresponding authors

Tianxiong Yu^†, Adriano Biasini^†, Katharine Cecchini^†, Martin Saflund, Haiwei Mou, Amena Arif, Atiyeh Eghbali, Dirk de Rooij, Zhiping Weng, Phillip D. Zamore*, and Deniz M. Ozata*
A-MYB/TCFL5 regulatory architecture ensures the production of pachytene piRNAs in placental mammals
RNA (2022)

Zixiu Li, Peng Zhou, Euijin Kwon, Katherine Fitzgerald, Zhiping Weng, and Chan Zhou
Flnc: Machine Learning Improves the Identification of Novel Long Noncoding RNAs from Stand-Alone RNA-Seq Data
Non-coding RNA (2022)

Jinrui Xu, Henry E Pratt, Jill E Moore, Mark B Gerstein*, Zhiping Weng*
Building integrative functional maps of gene regulation
Human Molecular Genetics (2022)

Lizhi He^†, Mingshi Gao^†, Henry Pratt^†, Zhiping Weng^*, Kevin Struhl^*
MafB, WDR77, and ß-catenin interact with each other and have similar genome association profiles
Plos One (2022)

Kathleen Morrill, Jessica Hekman, Xue Li, Jesse McClure, Brittney Logan, Linda Goodman, Mingshi Gao, Yinan Dong, Marjie Alonso, Elena Carmichael, Noah Snyder-Mackler, Jacob Alonso, Hyun Ji Noh, Jeremy Johnson, Michele Koltookian, Charlie Lieu, Kate Megquier, Ross Swofford, Jason Turner-Maier, Michelle E. White, Zhiping Weng, Andrés Colubri, Diane P. Genereux, Kathryn A. Lord, Elinor K. Karlsson
Ancestry-inclusive dog genomics challengespopular breed stereotypes
Science (2022)

I-Hao Wang, Evan Murray, Gregory Andrews, Hao-Ching Jiang, Sung Jin Park, Elisa Donnard, Violeta Durán-Laforet, Daniel M. Bear, Travis E. Faust, Manuel Garber, Christina E. Baer, Dorothy P. Schafer, Zhiping Weng, Fei Chen, Evan Z. Macosko, and Paul L. Greer
Spatial transcriptomic reconstruction of the mouse olfactory glomerular map suggests principles of odor processing
Nature Neuroscience (2022)

Jill E Moore, Xiao-Ou Zhang, Shaimae I Elhajjajy, Kaili Fan, Henry E Pratt, Fairlie Reese, Ali Mortazavi,  Zhiping Weng
Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types
Genome Research (2022)

Henry E Pratt^†, Gregory R Andrews^†, Nishigandha Phalke, Michael J Purcaro, Arjan van der Velde, Jill E Moore, and Zhiping Weng
Factorbook: an updated catalog of transcription factor motifs and candidate regulatory motif sites
Nucleic Acid Research (2022)
Factorbook website