ZLab Publications 2019

Xiao-Ou Zhang, Thomas R. Gingeras, and Zhiping Weng.
Genome-wide analysis of polymerase III-transcribed Alu elements suggests cell-type-specific enhancer function. 
Genome Research 29, no. 9 (2019): 1402-1414.

Fedor E. Gusev, Denis A. Reshetov, Amanda C. Mitchell, Tatiana V. Andreeva, Aslihan Dincer, Anastasia P. Grigorenko, Gennady Fedonin, Tobias Halene, Maria Aliseychik, Elena Filippova, Zhiping Weng, Schahram Akbarian & Evgeny I. Rogaev.
Chromatin profiling of cortical neurons identifies individual epigenetic signatures in schizophrenia. 
Translational psychiatry 9, no. 1 (2019): 1-10.

Tianxiong Yu, Birgit S. Koppetsch, Sara Pagliarani, Stephen Johnston, Noah J. Silverstein, Jeremy Luban, Keith Chappell, Zhiping Weng, and William E. Theurkauf.
The piRNA Response to Retroviral Invasion of the Koala Genome. 
Cell 179, no. 3 (2019): 632-643.

[...], Thom Vreven, Sweta Vangaveti, Tyler Borrman, Zhiping Weng, [...].
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment. 
Proteins: Structure, Function, and Bioinformatics 87, no. 12 (2019): 1200-1221.

Maxwell Libbrecht, Oscar L. Rodriquez, Zhiping Weng, Jeffrey Bilmes, Michael M. Hoffman, and William Stafford Noble. 
A Unified Encyclopedia of Human Functional DNA Elements through Fully Automated Annotation of 164 human Cell Types.
Genome biology 20, no. 1 (2019): 180.

Prashanth Rajarajan, Tyler Borrman, Will Liao, Sergio Espeso-Gil, Sandhya Chandrasekaran, Yan Jiang, Zhiping Weng, Kristen J. Brennand, and Schahram Akbarian.
Spatial genome exploration in the context of cognitive and neurological disease.
Current opinion in neurobiology 59 (2019): 112-119.

Daniel Tianfang Ge, Wei Wang, Cindy Tipping, Ildar Gainetdinov, Zhiping Weng, and Phillip D. Zamore.
The RNA-Binding ATPase, Armitage, Couples piRNA Amplification in Nuage to Phased piRNA Production on Mitochondria.
Molecular cell 74, no. 5 (2019): 982-995.

Fedor E Gusev, Denis A Reshetov, Amanda C Mitchell, Tatiana V Andreeva, Aslihan Dincer, Anastasia P Grigorenko, Gennady Fedonin, Tobias Halene, Maria Aliseychik, Andrey Y Goltsov, Victor Solovyev, Leonid Brizgalov, Elena Filippova, Zhiping Weng, Schahram Akbarian, and Evgeny I Rogaev.
Epigenetic-genetic chromatin footprinting identifies novel and subject-specific genes active in prefrontal cortex neurons.
The FASEB Journal 33, no. 7 (2019): 8161-8173.

Kiran Girdhar, Gabriel Hoffman, Yan Jiang, Marija Kundakovic, Mads Engel Hauberg, Ying-chih Wang, Hardik Shah, Zhiping Weng, Solveig K Sieberts, Mette A Peters, Brent T Harris, Barbara Lipska, Pamela Sklar, Panos Roussos, and Schahram Akbarian.
CELL-SPECIFIC HISTONE MODIFICATION MAPS LINK SCHIZOPHRENIA RISK TO THE NEURONAL EPIGENOME.
European Neuropsychopharmacology 29 (2019): S1009.

Timothy H. Chang, Eugenio Mattei, Ildar Gainetdinov, Cansu Colpan, Zhiping Weng, and Phillip D. Zamore.
Maelstrom Represses Canonical Polymerase II Transcription within Bi-directional piRNA Clusters in Drosophila melanogaster.
Molecular Cell 73, no. 2 (2019): 291-303.