Software

MDITRE

MDITRE is a new differentiable model that learns human interpretable rules from microbiome time-series data for classifying the status of the human host. The link to our repository is here github.com/gerberlab/mditre.

MDSINE

MDSINE is a computational tool that allows to infer dynamical system models of microbiome dynamics from time series sequencing data. The method paper is Bucci et al. 2016, Genome Biology. The link to our repository is here bitbucket.org/MDSINE/mdsine.