Publications

Liu F*, Wang B*, Deveaux L, Ash A, Gerber B, Allison J, Herbert C, Poitier M, MacDonell K, Li X, Stanton B. Predicting Adolescent Intervention Non-responsiveness for Precision HIV Prevention Using Machine Learning. AIDS Behav. 2023 May;27(5):1392-1402. doi: 10.1007/s10461-022-03874-4. Epub 2022 Oct 18. PubMed PMID: 36255592; PubMed Central PMCID: PMC10129965.

Keloth VK, Banda JM, Gurley M, Heider PM, Kennedy G, Liu H, Liu F, Miller T, Natarajan K, V Patterson O, Peng Y, Raja K, Reeves RM, Rouhizadeh M, Shi J, Wang X, Wang Y, Wei WQ, Williams AE, Zhang R, Belenkaya R, Reich C, Blacketer C, Ryan P, Hripcsak G, Elhadad N, Xu H. Representing and Utilizing Clinical Textual Data for Real World Studies: An OHDSI Approach. J Biomed Inform. 2023 Mar 17:104343. doi: 10.1016/j.jbi.2023. PMID: 36935011

Deer RR, Rock MA, Vasilevsky N, Carmody L, Rando H, Anzalone AJ, Basson MD, Bennett TD, Bergquist T, Boudreau EA, Bramante CT, Byrd JB, Callahan TJ, Chan LE, Chu H, Chute CG, Coleman BD, Davis HE, Gagnier J, Greene CS, Hillegass WB, Kavuluru R, Kimble WD, Koraishy FM, Köhler S, Liang C, Liu F, Liu H, Madhira V, Madlock-Brown CR, Matentzoglu N, Mazzotti DR, McMurry JA, McNair DS, Moffitt RA, Monteith TS, Parker AM, Perry MA, Pfaff E, Reese JT, Saltz J, Schuff RA, Solomonides AE, Solway J, Spratt H, Stein GS, Sule AA, Topaloglu U, Vavougios GD, Wang L, Haendel MA, Robinson PN. Characterizing Long COVID: Deep Phenotype of a Complex Condition. EBioMedicine. 2021 Dec; 74:103722. PMID: 34839263.

Liu F, Zhou P, Baccei SJ, Masciocchi MJ, Amornsiripanitch N, Kiefe CI, Rosen MP. Qualifying Certainty in Radiology Reports through Deep Learning-Based Natural Language Processing. AJNR Am J Neuroradiology. 2021 10; 42(10):1755-1761. PMID: 34413062.

Boudreaux ED, Rundensteiner E, Liu F, Wang B, Larkin C, Agu E, Ghosh S, Semeter J, Simon G, Davis-Martin RE. Applying Machine Learning Approaches to Suicide Prediction Using Healthcare Data: Overview and Future Directions. Front Psychiatry. 2021; 12:707916. PMID: 34413800.

Rando HM, Bennett TD, Byrd JB, Bramante C, Callahan TJ, Chute CG, Davis HE, Deer R, Gagnier J, Koraishy FM, Liu F, McMurry JA, Moffitt RA, Pfaff ER, Reese JT, Relevo R, Robinson PN, Saltz JH, Solomonides A, Sule A, Topaloglu U, Haendel MA. Challenges in defining Long COVID: Striking differences across literature, Electronic Health Records, and patient-reported information. medRxiv. 2021 Mar 26. PMID: 33791733.

Rawat BPS, Jagannatha A, Liu F, Yu H. Inferring ADR causality by predicting the Naranjo Score from Clinical Notes. AMIA Annu Symp Proc. 2020; 2020:1041-1049. PMID: 33936480.

Liu F, Zheng X., Wang B., Kiefe C. DeepGeneMD: A Joint Deep Learning Model for Extracting Gene Mutation-Disease Knowledge from PubMed Literature. BioNLP-OST at Empirical Methods in Natural Language Processing (EMNLP). 2019.

Liu F, Pradhan R, Druhl E, Freund E, Liu W, Sauer BC, Cunningham F, Gordon AJ, Peters CB, Yu H. Learning to detect and understand drug discontinuation events from clinical narratives. J Am Med Inform Assoc. 2019 Oct 1;26(10):943-951. doi: 10.1093/jamia/ocz048. PubMed PMID: 31034028; PubMed Central PMCID: PMC6748801.

Liu F, Jagannatha A, Yu H. Towards Drug Safety Surveillance and Pharmacovigilance: Current Progress in Detecting Medication and Adverse Drug Events from Electronic Health Records. Drug Saf. 2019 Jan;42(1):95-97. doi: 10.1007/s40264-018-0766-8. PubMed PMID: 30649734; PubMed Central PMCID: PMC6842570.

Liu F, Yu H. Learning to rank figures within a biomedical article. PLoS One. 2014;9(3):e61567. doi: 10.1371/journal.pone.0061567. eCollection 2014. PubMed PMID: 24625719; PubMed Central PMCID: PMC3953065.

Liu F, Moosavinasab S, Houston TK, Yu H. MedTxting: learning based and knowledge rich SMS-style medical text contraction. AMIA Annu Symp Proc. 2012;2012:558-67. Epub 2012 Nov 3. PubMed PMID: 23304328; PubMed Central PMCID: PMC3540574.

Liu F, Tur G, Hakkani-Tür D, Yu H. Towards spoken clinical-question answering: evaluating and adapting automatic speech-recognition systems for spoken clinical questions. J Am Med Inform Assoc. 2011 Sep-Oct;18(5):625-30. doi: 10.1136/amiajnl-2010-000071. Epub 2011 Jun 24. PubMed PMID: 21705457; PubMed Central PMCID: PMC3168303.

Cao Y, Liu F, Simpson P, Antieau L, Bennett A, Cimino JJ, Ely J, Yu H. AskHERMES: An online question answering system for complex clinical questions. J Biomed Inform. 2011 Apr;44(2):277-88. doi: 10.1016/j.jbi.2011.01.004. Epub 2011 Jan 21. PubMed PMID: 21256977; PubMed Central PMCID: PMC3433744.

Li Z, Liu F, Antieau L, Cao Y, Yu H. Lancet: a high precision medication event extraction system for clinical text. J Am Med Inform Assoc. 2010 Sep-Oct;17(5):563-7. doi: 10.1136/jamia.2010.004077. PubMed PMID: 20819865; PubMed Central PMCID: PMC2995682.

Cao Y, Li Z, Liu F, Agarwal S, Zhang Q, Yu H. An IR-aided machine learning framework for the BioCreative II.5 Challenge. IEEE/ACM Trans Comput Biol Bioinform. 2010 Jul-Sep;7(3):454-61. PMID: 20671317.

Liu F, Wang D, Li B, Liu Y. Improving Blog Polarity Classification via Topic Analysis and Adaptive Methods. NAACL-HLT. 2010.

Liu F, Pennell D, Liu F, Liu Y. Unsupervised Approaches to Automatic Keyword Extraction Using Meeting Transcripts. NAACL-HLT. 2009.

Liu F, Liu Y. Correlation between ROUGE and Human Evaluation of Extractive Meeting Summaries. ACL. 2008.

Liu F, Liu Y. Look Who is Talking: Soundbite Speaker Name Recognition in Broadcast News Speech. NAACL-HLT. 2007.

Liu F, Liu Y. Unsupervised Language Model Adaptation Incorporating Name Entity Information. ACL. 2007.